PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g035350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 310aa    MW: 35253.3 Da    PI: 9.333
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g035350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-056385123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k +  +s++k H++t+
  Csa17g035350.1 63 WVCERCSKGYAVQSDYKAHLKTC 85
                    58*******************98 PP

2zf-C2H211.50.0008993111523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg++Fsr +++  H+ t+
  Csa17g035350.1  93 DCGRVFSRVESFIEHQDTC 111
                     9***************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MHRRRHKVPW KLLKREKKDE EVRKRVYVCP EPTCLHNNPC HALGDLVGIK KHFRRKHSVH  60
KQWVCERCSK GYAVQSDYKA HLKTCGSRGH SCDCGRVFSR VESFIEHQDT CTIRHSPPTN  120
HRPLQQHTDA TVAPSRTTST TSFGPLLHGL PLLRPPPPPY QHSQALANYP FNALSASPFE  180
SLELQLSIGM TRTSAQAKST EKGETSLTKE RPNEEARMAE KMRQEAKRQI EMAETDFEKA  240
KRIRKEAKAE LEKAQIVREE AIKRINATMM EITCHSCKHL FQLPIMADES TSSLVMSYVS  300
SATTEGECE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934760.0AB493476.1 Arabidopsis thaliana At1g25250 mRNA for hypothetical protein, partial cds, clone: RAAt1g25250.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477975.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotQ9FRH40.0IDD16_ARATH; Protein indeterminate-domain 16
TrEMBLR0GPX00.0R0GPX0_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0001_27430.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25250.11e-150indeterminate(ID)-domain 16